PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_63506g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 339aa    MW: 36546.2 Da    PI: 4.602
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_63506g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.28.1e-051762071854
                    HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH  18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +++ Lr+++Pk       K++ a+iL  AveY+k+L
  MA_63506g0010 176 XRLFMLRSVVPKV-----SKMDRASILGDAVEYLKEL 207
                    57889*******5.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-9147216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-4158213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.019158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.30E-6159211No hitNo description
Gene3DG3DSA:4.10.280.101.2E-7159217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.581268339IPR002912ACT domain
CDDcd048736.74E-7276328No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAWTGLLDES FSSFRAMLDE GGGEYDFYST MDANGGTLEA LLGSALMCPD GSVLSNVGGS  60
INTFHDMGCS ITTSADTLEG PEGSDELGFQ QRQAGIESGF HKSGGNQNPN GIVGERDADS  120
AAATTTTNNH NNNNNDNGCV NASSVGRGRK NGLPAKNLMA ERRRRXXXXX XXXXXXRLFM  180
LRSVVPKVSK MDRASILGDA VEYLKELLQR INDLHIELMA GSSNSKPLVP TMPDFPYRMN  240
QESQASLLNP EVEPATVEVS TREGKALNIH MFCSKKPGLL LSTMRALDEL GLDVKQAIIS  300
CLNGFALDVF RAEQSMGGDV TAEEIKALLL HTADNEDGL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1226870.0BT122687.1 Picea sitchensis clone WS0454_C09 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461650.14e-72BHLH transcriptional factor
SwissprotQ9LPW33e-69SCRM2_ARATH; Transcription factor SCREAM2
TrEMBLD5A9341e-117D5A934_PICSI; Putative uncharacterized protein
STRINGBra016749.1-P3e-71(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.15e-70bHLH family protein